Synopsis: 4. biotech: Genus:


Livescience_2014 02647.txt

which differ depending on your genes. The gene that codes for the PTC receptor exists in two common forms (and a few rare forms)

which result in bitterness proteins with slightly different shapes. This in turn has an effect on how sensitive you are to bitterness but that s not the end of the story.

Instead our olfactory system can discriminate between thousands of different smells due to loads of different receptors all coded for by specific genes.

Different people have different genes. Given the number of different types of receptors involved the chances of having dinner with someone with the same set of receptors as you are quite low.


Livescience_2014 02696.txt

While the hors d'oeuvres were in keeping with the intrepid spirit of the evening Gene Rurka the man behind the menu had another motive in serving creepy crawlies to A-list explorers.


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whose aim is to free the seed that is to make sure that the genes in at least some plant seeds can never be locked away from use by intellectual property rights.


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This means that it contains three genomes each with two sets of chromosomes. Each of these three genomes comes from a different wild grass.

but their work could increase the availability of novel genes and therefore generate new characteristics for selection by breeding.


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genetic engineering speeds up the process by plucking beneficial genes from one organism and incorporating them into another.)


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and king cobra while not members of this genus are considered commonly cobras because they possess hoods poisonous fangs


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These pairs form sequences called genes that tell cells how to make proteins. It's a huge genome.

and colleagues assembled most of the sequence from part of a single pine nut#a haploid part of the seed with just one set of chromosomes to piece together.


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To figure out what might be causing the changes Teixeira and a team of researchers analyzed genes in the bark of five high-quality cork trees and five low-quality cork trees growing in Portugal.

but they have more genes that produce huge amounts of phenolic compounds UV-absorbing chemicals that collect inside the bark.


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But after the chicken genome was sequenced in 2004 researchers noticed the birds lacked the gene that encodes T1r2 a crucial component of the sweet-taste receptor.

and cheetahs true carnivores that also don't have a taste for sweets#they found these species still have a nonfunctional pseudogene (a nonfunctional gene that's lost its protein-coding powers) for the sweet-taste receptor.

despite their lack of the sweet-taste receptor Baldwin and colleagues cloned the genes for the T1r1-T1r3 taste receptors from omnivorous chickens insectivorous swifts and nectivorous hummingbirds.

The researchers then tested how the taste-receptor proteins produced by these genes reacted to different flavors in a cell culture.

Birds are the descendants of carnivorous dinosaurs so maybe this gene was lost early on because of the diet of their ancestors Baldwin said.


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The authors claimed to have found the evidence that pieces of PLANT DNA large enough to harbour full genes circulate in our blood.

Spisak makes no mention of GM genes in the original paper. My mind is completely put at ease by the thought that DNA from food has always been circulating in our blood.

For that to happen it would first need to be incorporated into your genome within the cell nucleus where all of your other genes reside.


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and then re-root he told Forbes. As for creating plant-animal hybrids here On earth that's most likely to happen in a geneticist's lab. It's theoretically possible given the right gene transfers to give people a coating of green photosynthetic skin.


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When the earthquake-triggered tsunami hit minutes later the wave was blazing It was an eerie thing to see a huge tide of fire washing ashore survivor Gene Kirkpatrick told National geographic magazine in 1964.


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and sharing DNA and performance measures for the animals in an effort to identify unique genes with the goal of connecting performance traits with DNA from various breeds.


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and his colleagues used hearts from pigs that had been engineered genetically to remove genes known to cause tissue rejection in humans

and replaced them with human genes that wouldn't cause an immune reaction. Pigs were chosen because their anatomy is similar to humans


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In monkey genus groups that practice polygyny the leader will mate with multiple females. The gestation periods for monkeys vary depending on the genus. For example the gestation for a rhesus monkey is 164 days Baboons have a similar gestation period of around 187 days.

Chimps on the other hand have a much longer gestation period of around 237 days according to the San jose State university.


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In addition they analyzed the DNA of six specific genes in the women's infants when they were 2 to 8 months old. 7 Ways Pregnant Women Affect Babies The researchers found that in all six genes the infants who were conceived during the rainy season had consistently higher rates of methylation in their DNA.

A methylation is made a change to DNA it's the addition of methyl groups to the DNA strand a so-called epigenetic modification to DNA

and is a process that can silence the expression of a gene. Methylation generally depends on nutrients such as folate choline methionine

In the study methylation in the infants'genes was linked to various nutrient levels in the mother's blood.

Our results represent the first demonstration in humans that a mother's nutritional well-being at the time of conception can change how her child's genes will be interpreted with a lifelong impact senior study author Branwen Hennig of the London School of Hygiene


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Studies have shown that about 10 to 15 percent of colon cancers have a mutation in a gene called BRAF.


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For the first challenge genetic scientists are only just beginning to understand how to construct detailed genetic models of important traits such as the number of genes

and the amount that each gene contributes to a complex trait like drought tolerance. For the second challenge as a mentor of mine recently said It's one thing to do applied research

There are still few examples of direct connections from genes to the ecosystem level but this is a whole new realm for both ecologists and geneticists.


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However while bison are also bovines (a subfamily of bovids) they are in a different genus from true buffalo.


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genes for better milk: Nature Newson 13 january, the US Department of agriculture (USDA) launched a service that allows dairy-cattle breeders to double their chances of selecting the best bulls to sire milk-producing cows.


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A search of plant genome databases found them to contain no genes comparable to those of certain bacteria known to make the gas.


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Wheat genes could help fight fungal epidemics: Nature Newsas farmers around the world anxiously monitor the march of a deadly orange fungus across their wheat fields,

the cloning of two fungus-fighting genes. Both genes fend of a wide range of'rust'fungi, including several types of stripe rust (Puccinia striiformis) and leaf rust (P. triticina.

The genes are found in some wild wheat, and can be bred into commercial varieties but that can be an arduous process taking several years to complete.

Knowing what the genes are and precisely where they are located in the genome could speed things up significantly,

breeders say. The results are welcome news as plant pathologists race to arm themselves against an ongoing epidemic of stem rust (P. graminis) caused by a recently emerged fungus called Ug99 (see'Wheat fungus spreads out of Africa'.

One problem is that breeders have relied traditionally on disease-resistance genes that are very effective

Increasingly, breeders are turning to a class of defence gene with a broader spectrum of resistance.

One such gene, called Lr34, has been fending off leaf and stripe rusts in some agricultural wheat for the past century.

and we haven't seen any sign of selection for virulence against that gene. Lr34 has also become a key component of wheat-breeding programmes aimed at distributing new varieties to the developing world.

But despite its venerable history, researchers have been unable to isolate the gene or work out how it confers resistance to fungal diseases.

The gene encodes a protein that is similar to molecular transporters that have been implicated in drug resistance.

Dubcovsky discovered the second fungi-fighting gene several years ago as a result of work on a wild wheat that has yields with an unusually high protein content2.

The gene that led to higher protein content happened to be located near a gene, called Yr36,

In wheat carrying just the Yr36 gene, 90%of the leaf was covered in rust. But in plants with both genes, only 5%of the leaf bore the fungus.

Dubcovsky has bred already lines that carry both genes and has begun to distribute them to farmers.

A similar synergistic effect between genes may also be useful in the fight against Ug99,

says Lagudah. Although Lr34 alone does not render plants resistant to the fungus, researchers have found that the gene can enhance the resistance found in some varieties4.

Lagudah says that breeders are pursuing this finding in hopes of generating Ug99-resistant varieties of wheat.


Nature 00158.txt

) The hybrid embryos also failed to properly express genes thought to be critical for pluripotency the ability to develop into a wide variety of cell types.

and increased their expression of many genes, including several known to be involved in pluripotency. Hybrid embryos

and to express known pluripotency genes properly. Lanza says that his team has ploughed through many different protocols and thousands of embryos over the years,

they might be able to circumvent those roadblocks by altering the expression of specific genes,


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Plants genes get fine tailoring: Nature Newsafter decades of searching, plant biologists have found a way to selectively snip out one gene

and replace it with another. The method promises to be a boon to both basic research

the gap can be sealed either simply in effect deleting the targeted gene or filled in with a new gene.

Zinc-finger nucleases have recently been used to create human immune cells that are resistant to HIV (see'Designer protein tackles HIV'.

Plant biologists have long been frustrated by the lack of a simple method for either deleting a specific gene from the genome or replacing it with another gene.

has not been targeted amenable to gene replacement. To have a really good model system you need targeted gene replacement,

says Joseph Ecker, a plant biologist at the Salk Institute for Biological Studies in La jolla, California.

Sporadic reports of plant gene-replacement strategies have come and gone, but none has been versatile

In 1997, a Nature paper reporting targeted gene disruption in Arabidopsis raised the hopes of many plant researchers3.

complex genomes, chock full of large families of genes with very similar DNA sequences, says Vipula Shukla, a scientific group leader at Dow Agrosciences in Indianapolis, Indiana.

That makes targeting a specific gene more difficult. The challenges associated with any kind of sequence-specific modification in plants are profound,

The team has used zinc fingers to replace a gene called IPK1 with an herbicide-resistance gene.

'Voytas's group has engineered herbicide-resistant tobacco by inserting specific mutations into a gene called Sur.

Both groups have replaced their selected genes at a frequency much higher than anyone has achieved before,

For instance, designing zinc fingers that target only one gene will probably still be a challenge,

Shukla notes that her team was able to target IPK1 without affecting a 98%-identical gene called IPK2.

Voytas'team was also able to target their gene without hitting another gene that is 96%identical.

But Voytas adds that some of the zinc-finger nucleases the team studied did cleave both genes,


Nature 00252.txt

genes for better milk. The project is having a profound impact on the industry today,

We have very little knowledge of the genes that are involved in cattle breeding says James Womack, a genome researcher at Texas A&m University in College Station,

This opens the door to finding the genes that underlie important traits. Dominette's genome sequence, published today in Science1,

For example, Dominette has many copies of some of the genes involved in the innate immune system,

wild cows that lived in Europe until their extinction in the seventeenth century providing periodic infusions of new genes,


Nature 00437.txt

which maize varieties were conserved in gene banks. In particular, they looked to see if the varieties that currently grow under higher temperatures those that will be most important for farmers as the climate warms are preserved well.

The gene-bank collections from many areas that are likely to have the widest range of diversity are either incomplete


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Sexual gene shuffling suppressed in plants: Nature Newsusing a combination of three genetic mutations, plant researchers have disrupted the usual process of genetic shuffling during the formation of reproductive cells male pollen and female ova.

Instead, researchers believe that a combination of genes or particular mutations will be needed to engineer an apomictic crop plant.

the need to engineer plants that generate their reproductive cells by mitosis rather than by meiosis, the form of cell division that shuffles the genome and passes different selections of genes into each reproductive cell.

Mercier and his colleagues searched for genes in the model plant Arabidopsis thaliana that were likely to be associated with meiosis on the basis of where

and when the genes were expressed. They found one that they named omission of second division (OSD1)

because plants mutant for this gene lacked the second round of cell division that occurs during meiosis. When the researchers combined mutations in the OSD1 gene with mutations in two other genes that affect meiosis,

but one practical limitation is the reliance upon mutations in three different genes. If we want to apply this,

And the more genes you have to bring together, the harder it will be. Achieving apomixis is still a distant goal, however.

fertilization causes the chromosome number of the offspring to double in each generation, an undesirable outcome.


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Boost for conservation of plant gene assets: Nature Newsan international treaty aimed at protecting and improving access to the world's plant genetic resources is set to dole out its first round of research grants this week amid cash-flow problems that could endanger future awards.

This information might be held in gene banks or in the form of crops growing in a farmer's field, for example.

The treaty has enabled the creation of a global gene pool, he says. David Ellis, curator of the Plant Genetic Resources Preservation Program within the US Department of agriculture's research service, says it has become standard practice for genetic material to be accessed


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According to results published this week in Proceedings of the National Academy of Sciences1, two genes from the 1918 influenza virus,

swine and human flu viruses would have swapped genes with avian viruses, ultimately giving rise to the dangerous assortment of genes carried by the 1918 virus. This work suggests that the generation of pandemic strains

and the adaptation to humans could be involved much more than was thought previously, says Raul Rabadan, a biomedical informatician at Columbia University college of Physicians and Surgeons in New york,

the researchers determined that a precursor to at least one 1918 flu gene was present in mammals before 1911.

and then swapped genes with mammalian flu viruses before becoming a pandemic. Meanwhile, elements of the 1957 pandemic flu virus also thought to be a mosaic of human

and avian flu genes were introduced probably into human populations two to six years before the pandemic, the researchers found.

Results from 1918 and 1957 pandemic flu suggest that public-health authorities should track the sequences of all influenza virus genes in emerging strains

rather than focusing largely on the gene that encodes the haemagglutinin'protein, which is critical for vaccine production,


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They are all combining more than one gene to have better control and to delay resistance.

Missouri, intends to launch a line of maize (corn) that contains eight different genes that make the crop resistant to herbicides and to attack by insects.


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Nature Newsjapanese research teams have pinpointed the genes in hardy varieties of rice that help the plants to outgrow rising paddy-field waters

Having these genes in more vulnerable rice varieties could save billions of dollars and feed millions more people.

and his colleagues found two genes that help plants to keep their leaves above water when partially submerged.

Japan, has found a gene that helps some types of rice fight off fungal infection and successfully isolated it from a linked stretch of DNA responsible for the terrible flavour of the wild varieties.

however, so researchers have sought the genes responsible for flood tolerance in the hope of introducing them into high-yielding rice varieties.

In 2006, a team led by David Mackill at the International Rice Research Institute in the Philippines discovered similar flood-tolerance genes a genetic cluster called Submergence 1 that allowed plants to survive for more than two weeks

they mapped a pair of genes dubbed SNORKEL1 and SNORKEL2 that together can trigger growth of up to 8 metres in the face of rising water levels (see video).

and Snorkel genes can now be crossed into common rice varieties to protect crops exposed to different flooding scenarios.

Submergence genes might be best; but when floodwaters climb in a progressive and prolonged fashion,

Snorkel genes will be more effective. It provides two strategies and they both have their importance,

Some wild rice species possess Snorkel genes, whereas only domesticated breeds contain the Submergence genes, he says.

Flooding is not the only threat to the world's largest diet staple. Rice blast disease destroys around 10-30%of global rice crops enough food to feed about 60 million people each year.

Some researchers have speculated that blast-immunity genes might directly confer terrible taste, but Fukuoka and his colleagues have shown that resistance

The team cloned a gene called Pi21, and showed that plants with two rare deletions had around 10 times fewer blast lesions than wild-type rice,

Fukuoka's group crossed the resistance gene into a tastier breed and mapped the foul flavour to a point a few thousand nucleotides downstream of the Pi21 gene,

indicating that Pi21 itself does not harm the rice's taste. Both research teams are breeding more-durable rice varieties.

because all of these genes can be transferred by crossing. Once these new cultivars are made, however, they still need to be tested both in the paddy and on the plate.


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Many maize varieties already contain a gene to make this compound. But most of the varieties that have emerged from commercial selective breeding particularly in North america have lost the ability to express it.

So the researchers inserted an (E)- Ã Â-caryophyllene synthase gene from the oregano plant a technique for which they have filed a patent.

because the oregano synthase gene is switched always on. Although this is better than spraying caryophyllene over a field


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For the other two species the beetle and the tree the researchers are concentrating mainly on expressed gene sequences, fragments of the complete DNA sequence, rather than the genomes in their entirety.

They've already amassed one of the largest insect libraries of gene transcripts for the bark beetle from more than a dozen beetle life stages and body parts.

We should be able to look at particular genes and say which population of trees is interacting with which population of fungus and which population of beetles,

pinpointed the gene responsible for staining the pine wood blue and created a knockout strain that does not produce any pigment.


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Potato blight's gene weaponry revealed: Nature Newsthe blight that caused the infamous Irish potato famine of the 1840s has yielded its genetic secrets.

In doing so, they've identified a number of genes that might be responsible for the blight's destructive powers and keys to its undoing.

When comparing P. infestans with similar organisms in the same genus, stretches of the genome stood out as being highly variable,

will provide a comprehensive list of these weapons genes. Researchers can now give them the individual treatment that they deserve to figure out what they are doing.

however, not knowing exactly what genes they are promoting or what genetic changes keep the blight nimbly adapting to their new varieties.


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for their discoveries of how chromosomes are protected by telomeres and the enzyme telomerase. The physics prize went to Charles Kao,


Nature 00814.txt

The team also found that the differences in gut microbial communities affected the expression of genes associated with the piglets'immune system.

Animals raised in the isolated environment expressed more genes involved in inflammatory immune responses and cholesterol synthesis,

whereas genes associated with T cells were expressed in the outdoor-reared pigs. Kelly says that until now,


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and federal officials say that they are implementing controls to prevent gene flow. Ariel  lvarez Morales, executive secretary of the Mexican Inter-Secretarial Commission on Biosafety of Genetically Modified Organisms, described the experimental planting as a compliance trial to see how the companies

There is no way to stop gene flow to the native crops, says signatory Montgomery Slatkin, a geneticist at the University of California, Berkeley.


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It gives us a tool for mapping genes that we didn't have before. The four-year

The 2. 3-billion-base sequence the largest genetic blueprint yet worked out for any plant species includes more than 32,000 protein-coding genes spread across maize's 10 chromosomes.

You can now find where genes that underlie certain traits are located, and, thus, you have the tools for how you go off

Herrera-Estrella's team also found more than a dozen genes related to heavy-metal detoxification and environmental-stress tolerance that were conserved in B73 and Palomero,

suggesting that these genes were involved in the domestication process2. Peering back into the geological record

The conservation of the metal-detoxification and stress-tolerance genes in the derived strains strongly suggests that environmental changes caused by volcanic activity represented an important driving force that acted early in maize domestication,

New york, sequenced part of the gene-rich region of 27 maize varieties to map haplotypes groups of genes that tend to stick together

This'Hapmap'revealed thousands of genes around the centres of the chromosomes, where they were unlikely to be shuffled around during recombination, the process in

Recombination is necessary for plant breeders to unite favourable genes from different crop varieties in a single plant.

So, without much recombination, effectively, there are thousands of genes that are recalcitrant to breeding efforts

and complementary sets of genes, says maize geneticist Patrick Schnable, an author on the genome paper1.

They found hundreds of genes that appeared only once in one or other of the two genomes5.

This suggests that crossing the two varieties could produce hybrids containing a higher number of beneficial genes.

The maize Hapmap also promises to make combining desirable genes easier, notes Buckler. That's because researchers can test seeds for DNA markers that flag up the presence of particular haplotypes,

The resource can also be used to produce heartier corn varieties by systematically scanning the genome for genes that underlie key traits,


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A combination of two gene regions, known as rbcl and matk, will be used as a'bar code'to uniquely identify every species of land plant, biologists announced last week at the Third International Barcode of Life Conference

The two-gene identifier beat a pair of other proposals put forward by the 52-member plant working group of the Consortium for the Barcode of Life in July (see go. nature. com/nztuhw.

Five gene-synthesis companies in a new International Gene Synthesis Consortium have adopted practices that are intended to address the biosecurity risks of the technology.

The consortium's members will screen incoming orders against a single database still being developed that contains gene sequences identified as potentially hazardous by authoritative groups,


Nature 00903.txt

'Massagee, whose symptoms hinted at a novel condition involving genes that control muscle formation, in fact received a diagnosis that already exists in the medical literature,


Nature 00976.txt

Kelly's team also found that the differences in gut microbes affected the expression of genes associated with the piglets'immune systems.

Animals raised in the isolated environment expressed more genes involved in inflammatory immune responses and cholesterol synthesis,

whereas genes linked with infection-fighting T cells were expressed in the outdoor-bred pigs. Glenn Gibson, a food microbiologist at the University of Reading, UK, says that previous studies have suggested that immune responses are linked to organisms in the gut.


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The team then inserted genes from other bacteria to produce enzymes able to break down hemicellulose.


Nature 01024.txt

or alleles, of each of its genes, one inherited from its mother and one from its father.

Wang suggests that the Qinling pandas carry a dominant gene for black fur and a recessive gene for brown fur.

when they inherit the recessive brown gene from both mother and father. The chances that both parents have the brown allele are ordinarily very low,

suggests Wang. But the coincidence would be much more likely if the pandas were related closely.

These anecdotal observations strongly suggest the presence of a recessive gene or genes, says Wang.

The idea is worth investigating, says Sheng-guo Fang, a researcher at Zhejiang University in Hangzhou, China,

or more pigmentation genes, says Fang. The Qinling Mountains have shaped brown subspecies of other mammals,

There are over 125 genes known to affect pigmentation in mice says Hopi Hoekstra, an evolutionary biologist at Harvard university in Cambridge, Massachusetts,

There are definitely a good handful of candidate genes you could sequence in the two morphs

So far, they have studied the sequence of some 50 genes known to be involved in pigmentation.


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