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ScienceDaily_2014 11332.txt

#Cow manure harbors diverse new antibiotic resistance genesmanure from dairy cows which is used commonly as a farm soil fertilizer contains a surprising number of newly identified antibiotic resistance genes from the cows'gut bacteria. The findings reported in mbioâ the online open-access journal of the American Society for Microbiology hints that cow manure is a potential source of new types of antibiotic resistance genes that transfer to bacteria in the soils where food is grown. Thousands of antibiotic resistance (AR) genes have already been identified but the vast majority of them don't pose a problem when found in harmless bacteria. The real worry is when these genes appear in the types of pathogenic bacteria that cause food-borne illnesses or hospital infections Since there is a connection between AR genes found in environmental bacteria and bacteria in hospitals we wanted to know what kind of bacteria are released into the environment via this route of manure fertilization says Fabienne Wichmann lead study author and former postdoctoral researcher at Yale university in New haven Connecticut. Farmers use raw or composted cow manure on some vegetable crops which could lead to a scenario where residual manure bacteria might cling to produce and they or their genes might move to the human ecosystem. Is this a route for movement of these genes from the barn to the table? asks Jo Handelsman senior study author and microbiologist at Yale. The first step toward an answer was surveying which AR genes are present in cow manure. Handelsman's team used a powerful screening-plus-sequencing approach to identify 80 unique and functional AR genes. The genes made a laboratory strain of Escherichia coli bacteria resistant to one of four types of antibiotics--beta-lactams (like penicillin) aminoglycosides (like kanamycin) tetracycline or chloramphenicol. Roughly 75%of the 80 AR genes had sequences that were only distantly related to AR genes already discovered. The team also found an entire new family of AR genes that confer resistance to chloramphenicol antibiotics which are used commonly to treat respiratory infections in livestock. The diversity of genes we found is remarkable in itself considering the small set of five manure samples says Handelsman who is also a Howard Hughes Medical Institute Professor. But also these are evolutionarily distant from the genes we already have in the genetic databases which largely represent AR genes we see in the clinic. That might signal good news that AR genes from cow gut bacteria are not currently causing problems for human patients. But Wichmann points out another possibility is that cow manure harbors an unprecedented reservoir of AR genes that could be next to move into humans. This is just the first in a sequence of studies--starting in the barn moving to the soil and food on the table and then ending up in the clinic--to find out whether these genes have the potential to move in that direction says Handelsman. AR genes can enter the human ecosystem by two routes--either the bacteria that contain them colonize humans or the genes are transferred through a process called horizontal gene transfer to other bacteria that colonize humans. Research has shown already that bacteria are transferred from farm animals to their human caretakers. Gene transfer enables genes to jump between microorganisms that are related not and it occurs in most environments that host bacteria. Some manure bacteria might be pathogenic to humans so if they acquire antibiotic resistance they could pose a problem. Alternatively benign bacteria in manure might transfer resistance genes to pathogens at any point along the path--in manure soil food or humans. We're hoping this study will open up a larger field of surveillance to start looking at new types of resistance before they show up in the clinic says Handelsman. Story Source: The above story is provided based on materials by American Society for Microbiology. Note: Materials may be edited for content and length. Journal Reference n

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